Genotype tab¶
Genotype data is visualised in the Genotype tab in the right hand panel
The genotype matrix requires two inputs, the features and accessions which can be inputted a number of ways.
Inputting features and accessions¶
Note
The search function on the Genotype tab is only available once a VCF dataset has been loaded.
VCF Genotype datasets can be added using the search function in the explore tab. For more information see Searching for a dataset
Features can be selected via the view by selecting a region of the axis.
Acessions can be added via a pop out menu from the genotype tab.
If the exact feature names are known, it can be inputted using the VCF Genotype Search function
Interpreting the genotype matrix¶
| Display | Meaning | Colour |
|---|---|---|
| 0 | Reference | Blue |
| 1 | Heterozygous | Light-blue |
| 2 | Alternate | Orange |
Ordering the genotype matrix¶
The genotype matrix can be ordered by clicking on the specific allele located in the ref and alt columns. This will order the accessions based on the specific selected alleles.